step2_funcs.hpp

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#include <string>
#include <fstream>
#include <vector>
#include <map>
#include <sstream>


#include <sys/types.h>
#include <sys/stat.h>
#include <unistd.h>
#include <stdexcept>



#include <stdlib.h>
#include <errno.h>
#include <sys/wait.h>
#include <cmath>



#ifndef __STEPTWO_H__
#define __STEPTWO_H__

#include "step1_funcs.hpp"

#include <gmp.h>

extern "C" {
    #include "bertini.h"
}


void parse_input_file_bertini(unsigned int & currentSeed, int & MPType);



void run_zero_dim_main(int MPType, unsigned int currentSeed);




void SetUpFolders(std::string base_dir,
                  int numprocs,
                  int numfilesatatime,
                  std::string templocation);

std::string WriteStep2(std::vector<std::pair<double, double> > CValues,
               ProgSettings paramotopy_settings,
               runinfo paramotopy_info);

std::string WriteFailStep2(std::vector<std::pair<double, double> > CValues,
               ProgSettings paramotopy_settings,
               runinfo paramotopy_info);




//void CallBertiniStep2(std::string param_dir);


std::string MakeTargetFilename(std::string base_dir,
                   ToSave *TheFiles,
                   int index);


//void TouchFilesToSave(ProgSettings paramotopy_settings,
//                    std::string base_dir);



void SetFileCount(ProgSettings & paramotopy_settings,
                  std::string DataCollectedBaseDir);




#endif